Detailed information of SNP:
|
SNP ID:
sf0321278737(Gbrowse)
Chromosome: chr03 Position: 21278737 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 60.77% | 39.23% |
| All Indica | 762 | 98.03% | 1.97% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 355 | 98.59% | 1.41% |
| Indica II | 203 | 97.04% | 2.96% |
| Indica Intermediate | 204 | 98.04% | 1.96% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321278737 | T->G | INTERGENIC | None |