Detailed information of SNP:
|
SNP ID:
sf0321298792(Gbrowse)
Chromosome: chr03 Position: 21298792 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 93.51% | 6.49% |
| All Indica | 795 | 91.82% | 8.18% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 57 | 63.16% | 36.84% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 211 | 78.20% | 21.80% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321298792 | T->C | INTERGENIC | None |