Detailed information of SNP:
|
SNP ID:
sf0321318419(Gbrowse)
Chromosome: chr03 Position: 21318419 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.20% | 40.80% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321318419 | C->T | INTERGENIC | None |