Detailed information of SNP:
|
SNP ID:
sf0321322177(Gbrowse)
Chromosome: chr03 Position: 21322177 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 60.00% | 40.00% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 64 | 60.94% | 39.06% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321322177 | G->A | INTERGENIC | None |