Detailed information of SNP:



SNP ID: sf0321374948(Gbrowse)

Chromosome: chr03

Position: 21374948
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 97.46% 2.54%
All Indica799 99.87% 0.13%
All Japonica497 93.16% 6.84%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 65.96% 34.04%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0321374948 C->T INTERGENIC None