Detailed information of SNP:
|
SNP ID:
sf0321401391(Gbrowse)
Chromosome: chr03 Position: 21401391 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 52.11% | 47.89% |
| All Indica | 784 | 82.14% | 17.86% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 367 | 79.56% | 20.44% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 206 | 82.52% | 17.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321401391 | C->T | LOC_Os03g38570(LOC_Os03g38570.1) | Synonymous |