Detailed information of SNP:
|
SNP ID:
sf0321401878(Gbrowse)
Chromosome: chr03 Position: 21401878 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 77.01% | 22.99% |
| All Indica | 747 | 61.45% | 38.55% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 340 | 45.59% | 54.41% |
| Indica II | 207 | 84.06% | 15.94% |
| Indica Intermediate | 200 | 65.00% | 35.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321401878 | C->T | LOC_Os03g38570(LOC_Os03g38570.1) | Non-Synonymous SNP |