Detailed information of SNP:
|
SNP ID:
sf0321405119(Gbrowse)
Chromosome: chr03 Position: 21405119 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1208 | 70.20% | 29.80% |
| All Indica | 600 | 44.50% | 55.50% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 66.13% | 33.87% |
| Indica I | 305 | 36.39% | 63.61% |
| Indica II | 134 | 61.94% | 38.06% |
| Indica Intermediate | 161 | 45.34% | 54.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 82.86% | 17.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321405119 | T->G | LOC_Os03g38570(LOC_Os03g38570.1) | Synonymous |