Detailed information of SNP:
|
SNP ID:
sf0321436457(Gbrowse)
Chromosome: chr03 Position: 21436457 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.15% | 42.85% |
| All Indica | 799 | 91.74% | 8.26% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321436457 | C->A | INTERGENIC | None |