Detailed information of SNP:
|
SNP ID:
sf0321442580(Gbrowse)
Chromosome: chr03 Position: 21442580 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.24% | 39.76% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321442580 | T->C | INTERGENIC | None |