Detailed information of SNP:
|
SNP ID:
sf0321475844(Gbrowse)
Chromosome: chr03 Position: 21475844 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 62.46% | 37.54% |
| All Indica | 792 | 47.35% | 52.65% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 22.19% | 77.81% |
| Indica II | 211 | 79.15% | 20.85% |
| Indica Intermediate | 207 | 60.39% | 39.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321475844 | T->G | INTERGENIC | None |