Detailed information of SNP:
|
SNP ID:
sf0321532122(Gbrowse)
Chromosome: chr03 Position: 21532122 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 55.12% | 44.88% |
| All Indica | 799 | 30.29% | 69.71% |
| All Japonica | 493 | 94.93% | 5.07% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 48.80% | 51.20% |
| Indica II | 213 | 7.04% | 92.96% |
| Indica Intermediate | 211 | 20.85% | 79.15% |
| Temperate Japonica | 331 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321532122 | G->A | INTERGENIC | None |