Detailed information of SNP:
|
SNP ID:
sf0321536142(Gbrowse)
Chromosome: chr03 Position: 21536142 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 60.51% | 39.49% |
| All Indica | 796 | 91.58% | 8.42% |
| All Japonica | 495 | 5.25% | 94.75% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 90.59% | 9.41% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 333 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321536142 | T->C | INTERGENIC | None |