Detailed information of SNP:
|
SNP ID:
sf0321576359(Gbrowse)
Chromosome: chr03 Position: 21576359 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 62.69% | 37.31% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 493 | 5.88% | 94.12% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 0.91% | 99.09% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321576359 | C->T | LOC_Os03g38850(LOC_Os03g38850.1) | Non-Synonymous SNP |