Detailed information of SNP:
|
SNP ID:
sf0321581269(Gbrowse)
Chromosome: chr03 Position: 21581269 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1207 | 96.85% | 3.15% |
| All Indica | 591 | 93.91% | 6.09% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 306 | 96.08% | 3.92% |
| Indica II | 105 | 92.38% | 7.62% |
| Indica Intermediate | 180 | 91.11% | 8.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321581269 | A->G | INTERGENIC | None |