Detailed information of SNP:
|
SNP ID:
sf0321592755(Gbrowse)
Chromosome: chr03 Position: 21592755 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.72% | 37.28% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321592755 | T->C | INTERGENIC | None |