Detailed information of SNP:
|
SNP ID:
sf0321771051(Gbrowse)
Chromosome: chr03 Position: 21771051 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 55.30% | 44.70% |
| All Indica | 797 | 93.60% | 6.40% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321771051 | G->A | INTERGENIC | None |