Detailed information of SNP:
|
SNP ID:
sf0321779628(Gbrowse)
Chromosome: chr03 Position: 21779628 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 98.85% | 1.15% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 470 | 97.02% | 2.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 99.69% | 0.31% |
| Tropical Japonica | 82 | 85.37% | 14.63% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321779628 | G->T | INTERGENIC | None |