Detailed information of SNP:
|
SNP ID:
sf0321806745(Gbrowse)
Chromosome: chr03 Position: 21806745 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 66.05% | 33.95% |
| All Indica | 781 | 46.99% | 53.01% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 373 | 24.93% | 75.07% |
| Indica II | 203 | 72.41% | 27.59% |
| Indica Intermediate | 205 | 61.95% | 38.05% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321806745 | T->G | LOC_Os03g39250(LOC_Os03g39250.1) | Non-Synonymous SNP |