Detailed information of SNP:
|
SNP ID:
sf0321807667(Gbrowse)
Chromosome: chr03 Position: 21807667 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 57.89% | 42.11% |
| All Indica | 748 | 34.22% | 65.78% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 63 | 69.84% | 30.16% |
| Indica I | 366 | 19.67% | 80.33% |
| Indica II | 183 | 53.01% | 46.99% |
| Indica Intermediate | 199 | 43.72% | 56.28% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321807667 | A->G | LOC_Os03g39250(LOC_Os03g39250.1) | Synonymous |