Detailed information of SNP:
|
SNP ID:
sf0321807813(Gbrowse)
Chromosome: chr03 Position: 21807813 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1347 | 60.21% | 39.79% |
| All Indica | 738 | 37.13% | 62.87% |
| All Japonica | 496 | 91.94% | 8.06% |
| Aus | 59 | 84.75% | 15.25% |
| Indica I | 367 | 19.62% | 80.38% |
| Indica II | 185 | 61.62% | 38.38% |
| Indica Intermediate | 186 | 47.31% | 52.69% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321807813 | A->G | LOC_Os03g39250(LOC_Os03g39250.1) | Non-Synonymous SNP |