Detailed information of SNP:
|
SNP ID:
sf0321807855(Gbrowse)
Chromosome: chr03 Position: 21807855 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 67.48% | 32.52% |
| All Indica | 781 | 49.04% | 50.96% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 371 | 26.95% | 73.05% |
| Indica II | 203 | 74.88% | 25.12% |
| Indica Intermediate | 207 | 63.29% | 36.71% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321807855 | A->G | LOC_Os03g39250(LOC_Os03g39250.1) | Non-Synonymous SNP |