Detailed information of SNP:
|
SNP ID:
sf0321825591(Gbrowse)
Chromosome: chr03 Position: 21825591 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1364 | 79.77% | 20.23% |
| All Indica | 749 | 65.69% | 34.31% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 355 | 70.14% | 29.86% |
| Indica II | 197 | 59.90% | 40.10% |
| Indica Intermediate | 197 | 63.45% | 36.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321825591 | G->A | LOC_Os03g39284(LOC_Os03g39284.1) | Non-Synonymous SNP |