Detailed information of SNP:
|
SNP ID:
sf0321825756(Gbrowse)
Chromosome: chr03 Position: 21825756 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 96.56% | 3.44% |
| All Indica | 751 | 96.54% | 3.46% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 367 | 98.37% | 1.63% |
| Indica II | 191 | 91.10% | 8.90% |
| Indica Intermediate | 193 | 98.45% | 1.55% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321825756 | C->T | LOC_Os03g39284(LOC_Os03g39284.1) | Non-Synonymous SNP |