Detailed information of SNP:
|
SNP ID:
sf0321840395(Gbrowse)
Chromosome: chr03 Position: 21840395 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1334 | 84.86% | 15.14% |
| All Indica | 736 | 80.03% | 19.97% |
| All Japonica | 481 | 95.63% | 4.37% |
| Aus | 62 | 79.03% | 20.97% |
| Indica I | 350 | 84.57% | 15.43% |
| Indica II | 189 | 77.78% | 22.22% |
| Indica Intermediate | 197 | 74.11% | 25.89% |
| Temperate Japonica | 329 | 99.09% | 0.91% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 60 | 78.33% | 21.67% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321840395 | A->G | INTERGENIC | None |