Detailed information of SNP:
|
SNP ID:
sf0321860838(Gbrowse)
Chromosome: chr03 Position: 21860838 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 60.35% | 39.65% |
| All Indica | 768 | 91.93% | 8.07% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 368 | 94.29% | 5.71% |
| Indica II | 192 | 89.58% | 10.42% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321860838 | T->C | INTERGENIC | None |