Detailed information of SNP:
|
SNP ID:
sf0321867286(Gbrowse)
Chromosome: chr03 Position: 21867286 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 53.32% | 46.68% |
| All Indica | 780 | 86.03% | 13.97% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 55 | 83.64% | 16.36% |
| Indica I | 368 | 86.68% | 13.32% |
| Indica II | 207 | 90.34% | 9.66% |
| Indica Intermediate | 205 | 80.49% | 19.51% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321867286 | G->A | LOC_Os03g39350(LOC_Os03g39350.1) | INTRON |