Detailed information of SNP:
|
SNP ID:
sf0321868738(Gbrowse)
Chromosome: chr03 Position: 21868738 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 90.93% | 9.07% |
| All Indica | 789 | 87.71% | 12.29% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 58 | 62.07% | 37.93% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 206 | 68.45% | 31.55% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321868738 | A->G | LOC_Os03g39350(LOC_Os03g39350.1) | Non-Synonymous SNP |