Detailed information of SNP:
|
SNP ID:
sf0321871585(Gbrowse)
Chromosome: chr03 Position: 21871585 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 54.41% | 45.59% |
| All Indica | 776 | 85.70% | 14.30% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 89.52% | 10.48% |
| Indica II | 205 | 80.00% | 20.00% |
| Indica Intermediate | 199 | 84.42% | 15.58% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321871585 | C->T | LOC_Os03g39350(LOC_Os03g39350.1) | Synonymous |