Detailed information of SNP:
|
SNP ID:
sf0321929113(Gbrowse)
Chromosome: chr03 Position: 21929113 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1315 | 91.25% | 8.75% |
| All Indica | 717 | 86.61% | 13.39% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 50 | 76.00% | 24.00% |
| Indica I | 341 | 87.98% | 12.02% |
| Indica II | 192 | 85.42% | 14.58% |
| Indica Intermediate | 184 | 85.33% | 14.67% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321929113 | T->C | LOC_Os03g39470(LOC_Os03g39470.1) | Synonymous |