Detailed information of SNP:
|
SNP ID:
sf0321929187(Gbrowse)
Chromosome: chr03 Position: 21929187 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1254 | 89.07% | 10.93% |
| All Indica | 656 | 83.08% | 16.92% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 51 | 64.71% | 35.29% |
| Indica I | 328 | 87.20% | 12.80% |
| Indica II | 161 | 81.99% | 18.01% |
| Indica Intermediate | 167 | 76.05% | 23.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321929187 | A->G | LOC_Os03g39470(LOC_Os03g39470.1) | Non-Synonymous SNP |