Detailed information of SNP:
|
SNP ID:
sf0321953792(Gbrowse)
Chromosome: chr03 Position: 21953792 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 97.25% | 2.75% |
| All Indica | 796 | 99.12% | 0.88% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321953792 | G->A | LOC_Os03g39530(LOC_Os03g39530.1) | INTRON |