Detailed information of SNP:
|
SNP ID:
sf0321959293(Gbrowse)
Chromosome: chr03 Position: 21959293 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1253 | 62.01% | 37.99% |
| All Indica | 796 | 92.71% | 7.29% |
| All Japonica | 340 | 0.59% | 99.41% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 224 | 0.45% | 99.55% |
| Tropical Japonica | 64 | 1.56% | 98.44% |
| Japonica Intermediate | 52 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 36 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321959293 | A->T | INTERGENIC | None |