Detailed information of SNP:
|
SNP ID:
sf0321960048(Gbrowse)
Chromosome: chr03 Position: 21960048 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 59.53% | 40.47% |
| All Indica | 789 | 43.98% | 56.02% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 55 | 1.82% | 98.18% |
| Indica I | 371 | 70.89% | 29.11% |
| Indica II | 209 | 11.48% | 88.52% |
| Indica Intermediate | 209 | 28.71% | 71.29% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321960048 | T->C | INTERGENIC | None |