Detailed information of SNP:
|
SNP ID:
sf0321971485(Gbrowse)
Chromosome: chr03 Position: 21971485 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 58.55% | 41.45% |
| All Indica | 767 | 86.44% | 13.56% |
| All Japonica | 457 | 6.56% | 93.44% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 346 | 84.39% | 15.61% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 208 | 87.50% | 12.50% |
| Temperate Japonica | 303 | 1.32% | 98.68% |
| Tropical Japonica | 89 | 10.11% | 89.89% |
| Japonica Intermediate | 65 | 26.15% | 73.85% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 35 | 51.43% | 48.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321971485 | A->G | LOC_Os03g39570(LOC_Os03g39570.1) | Non-Synonymous SNP |