Detailed information of SNP:
|
SNP ID:
sf0321984152(Gbrowse)
Chromosome: chr03 Position: 21984152 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 57.18% | 42.82% |
| All Indica | 790 | 87.97% | 12.03% |
| All Japonica | 494 | 6.48% | 93.52% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 367 | 83.65% | 16.35% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 9.78% | 90.22% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321984152 | C->T | INTERGENIC | None |