Detailed information of SNP:
|
SNP ID:
sf0321987752(Gbrowse)
Chromosome: chr03 Position: 21987752 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 74.93% | 25.07% |
| All Indica | 769 | 58.39% | 41.61% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 367 | 81.47% | 18.53% |
| Indica II | 205 | 28.29% | 71.71% |
| Indica Intermediate | 197 | 46.70% | 53.30% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321987752 | G->A | LOC_Os03g39594(LOC_Os03g39594.1) | Non-Synonymous SNP |