Detailed information of SNP:
|
SNP ID:
sf0321990324(Gbrowse)
Chromosome: chr03 Position: 21990324 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1343 | 89.43% | 10.57% |
| All Indica | 729 | 82.30% | 17.70% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 367 | 93.73% | 6.27% |
| Indica II | 176 | 63.64% | 36.36% |
| Indica Intermediate | 186 | 77.42% | 22.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0321990324 | T->C | LOC_Os03g39598(LOC_Os03g39598.1) | Non-Synonymous SNP |