Detailed information of SNP:
|
SNP ID:
sf0322034073(Gbrowse)
Chromosome: chr03 Position: 22034073 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.28% | 38.72% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322034073 | G->A | INTERGENIC | None |