Detailed information of SNP:
|
SNP ID:
sf0322103839(Gbrowse)
Chromosome: chr03 Position: 22103839 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 94.27% | 5.73% |
| All Indica | 725 | 89.93% | 10.07% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 330 | 84.85% | 15.15% |
| Indica II | 203 | 93.10% | 6.90% |
| Indica Intermediate | 192 | 95.31% | 4.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322103839 | C->T | INTERGENIC | None |