Detailed information of SNP:
|
SNP ID:
sf0322153248(Gbrowse)
Chromosome: chr03 Position: 22153248 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 55.14% | 44.86% |
| All Indica | 781 | 29.07% | 70.93% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 368 | 32.34% | 67.66% |
| Indica II | 206 | 24.27% | 75.73% |
| Indica Intermediate | 207 | 28.02% | 71.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322153248 | G->A | LOC_Os03g39840(LOC_Os03g39840.1) | Synonymous |