Detailed information of SNP:



SNP ID: sf0322153248(Gbrowse)

Chromosome: chr03

Position: 22153248
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1400 55.14% 44.86%
All Indica781 29.07% 70.93%
All Japonica497 99.60% 0.40%
Aus67 17.91% 82.09%
Indica I368 32.34% 67.66%
Indica II206 24.27% 75.73%
Indica Intermediate207 28.02% 71.98%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 60.98% 39.02%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0322153248 G->A LOC_Os03g39840(LOC_Os03g39840.1) Synonymous