Detailed information of SNP:
|
SNP ID:
sf0322158241(Gbrowse)
Chromosome: chr03 Position: 22158241 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 79.25% | 20.75% |
| All Indica | 797 | 65.50% | 34.50% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 62.20% | 37.80% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322158241 | G->A | INTERGENIC | None |