Detailed information of SNP:
|
SNP ID:
sf0322173344(Gbrowse)
Chromosome: chr03 Position: 22173344 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1337 | 96.26% | 3.74% |
| All Indica | 759 | 99.74% | 0.26% |
| All Japonica | 459 | 89.76% | 10.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 100.00% | 0.00% |
| Indica II | 202 | 100.00% | 0.00% |
| Indica Intermediate | 202 | 99.01% | 0.99% |
| Temperate Japonica | 310 | 92.90% | 7.10% |
| Tropical Japonica | 84 | 92.86% | 7.14% |
| Japonica Intermediate | 65 | 70.77% | 29.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322173344 | G->A | LOC_Os03g39880(LOC_Os03g39880.1) | UTR_3_PRIME |