Detailed information of SNP:
|
SNP ID:
sf0322177704(Gbrowse)
Chromosome: chr03 Position: 22177704 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 53.85% | 46.15% |
| All Indica | 767 | 31.94% | 68.06% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 362 | 26.24% | 73.76% |
| Indica II | 206 | 39.81% | 60.19% |
| Indica Intermediate | 199 | 34.17% | 65.83% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 8 | 50.00% | 50.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322177704 | A->G | INTERGENIC | None |