Detailed information of SNP:
|
SNP ID:
sf0322265595(Gbrowse)
Chromosome: chr03 Position: 22265595 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 78.49% | 21.51% |
| All Indica | 798 | 73.31% | 26.69% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322265595 | C->T | LOC_Os03g40080(LOC_Os03g40080.1) | Synonymous |