Detailed information of SNP:
|
SNP ID:
sf0322273109(Gbrowse)
Chromosome: chr03 Position: 22273109 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 77.10% | 22.90% |
| All Indica | 782 | 62.92% | 37.08% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 361 | 38.50% | 61.50% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 209 | 74.16% | 25.84% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322273109 | G->A | INTERGENIC | None |