Detailed information of SNP:
|
SNP ID:
sf0322300479(Gbrowse)
Chromosome: chr03 Position: 22300479 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 86.89% | 13.11% |
| All Indica | 799 | 77.85% | 22.15% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 54.98% | 45.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322300479 | T->C | INTERGENIC | None |