Detailed information of SNP:
|
SNP ID:
sf0322354222(Gbrowse)
Chromosome: chr03 Position: 22354222 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.56% | 41.44% |
| All Indica | 799 | 36.80% | 63.20% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 16.00% | 84.00% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322354222 | A->T | INTERGENIC | None |