Detailed information of SNP:
|
SNP ID:
sf0322354920(Gbrowse)
Chromosome: chr03 Position: 22354920 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 81.82% | 18.18% |
| All Indica | 794 | 70.15% | 29.85% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 210 | 31.90% | 68.10% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322354920 | G->C | INTERGENIC | None |