Detailed information of SNP:
|
SNP ID:
sf0322366001(Gbrowse)
Chromosome: chr03 Position: 22366001 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 62.72% | 37.28% |
| All Indica | 792 | 40.53% | 59.47% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 43 | 58.14% | 41.86% |
| Indica I | 370 | 21.35% | 78.65% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 209 | 32.54% | 67.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0322366001 | C->T | INTERGENIC | None |